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This cgi is a front end to the PIGOK SQL database. The database holds the pI, Molecular Weight, Codon Adaptation Index ,Species, Entrez Gene number and Gene Ontology information for each protein entry. The cgi also generates links to the KEGG database or can query it directly and determine and report links to the actual KEGG pathways. Here are some examples of the types of graphs you can generate from the results of a search and the CAI and GO Slim Summaries. Enter a list of accession numbers that you wish to view.
PIGOK currently contains links to these databases:
Links are provided to the original sources, SRS, Entrez Gene and KEGG . The pI, molecular weight and where appropriate the CAI, have been generated with the EMBOSS suite of programs and BioPerl. The database now incorporates the Gene Ontology Slim definitions. A complete list of CAI values for S.
pombe and S. cerevisiae
suitable for graphing are also available. Pigok is the English translation of the Chinese name for a perch like
fish Therapon cancellatus. Known bugsUnfortunately there is still a bug in the CGI when duplicate accession numbers are submitted the CGI returns erroneous line in the table with repeated GO information. This bug will be fixed as soon as possible. The work around is to remove duplicate entries from the list. May 22, 2005. ChangelogProject initiated June 23, 2003. |
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Last updated
September 14, 2005
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